STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGF29SAGA-associated factor 29. (200 aa)    
Predicted Functional Partners:
TAF12
Transcription initiation factor TFIID subunit 12.
   
 0.996
USP22
Ubiquitin carboxyl-terminal hydrolase.
   
 0.996
TADA3
Transcriptional adapter 3.
    
 0.995
TADA2A
Transcriptional adapter.
    
 0.995
LOC110474354
Transcription initiation factor TFIID subunit 9.
   
 0.995
SUPT3H
Transcription initiation protein SPT3.
    
 0.994
TRRAP
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.993
SUPT20H
Transcription factor SPT20.
    
 0.993
KAT14
Cysteine-rich protein 2-binding protein.
   
 0.991
ZZZ3
ZZ-type zinc finger-containing protein 3.
    
 0.990
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.