PACRG protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

PACRG

Parkin coregulated gene protein. (249 aa)

Predicted Functional Partners:

WDR90

0.920

MEIG1

0.909

EFHC2

0.835

ENKUR

0.811

EFHC1

0.784

MNS1

0.752

CFAP20

0.745

TEKT2

0.715

TEKT1

0.703

CUNH9orf116

0.696

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFAP20	CUNH9orf116	ENSLSDP00000022523	ENSLSDP00000003971	Cilia-and flagella-associated protein 20.	UPF0691 protein C9orf116.	0.685
CFAP20	EFHC1	ENSLSDP00000022523	ENSLSDP00000015161	Cilia-and flagella-associated protein 20.	EF-hand domain-containing protein 1.	0.627
CFAP20	EFHC2	ENSLSDP00000022523	ENSLSDP00000009032	Cilia-and flagella-associated protein 20.	EF-hand domain-containing family member C2.	0.728
CFAP20	ENKUR	ENSLSDP00000022523	ENSLSDP00000019584	Cilia-and flagella-associated protein 20.	Enkurin.	0.681
CFAP20	MNS1	ENSLSDP00000022523	ENSLSDP00000021433	Cilia-and flagella-associated protein 20.	Meiosis-specific nuclear structural protein 1.	0.685
CFAP20	PACRG	ENSLSDP00000022523	ENSLSDP00000005986	Cilia-and flagella-associated protein 20.	Parkin coregulated gene protein.	0.745
CFAP20	TEKT1	ENSLSDP00000022523	ENSLSDP00000019527	Cilia-and flagella-associated protein 20.	Tektin-1.	0.685
CFAP20	TEKT2	ENSLSDP00000022523	ENSLSDP00000020959	Cilia-and flagella-associated protein 20.	Tektin-2.	0.688
CUNH9orf116	CFAP20	ENSLSDP00000003971	ENSLSDP00000022523	UPF0691 protein C9orf116.	Cilia-and flagella-associated protein 20.	0.685
CUNH9orf116	EFHC1	ENSLSDP00000003971	ENSLSDP00000015161	UPF0691 protein C9orf116.	EF-hand domain-containing protein 1.	0.582
CUNH9orf116	EFHC2	ENSLSDP00000003971	ENSLSDP00000009032	UPF0691 protein C9orf116.	EF-hand domain-containing family member C2.	0.718
CUNH9orf116	ENKUR	ENSLSDP00000003971	ENSLSDP00000019584	UPF0691 protein C9orf116.	Enkurin.	0.541
CUNH9orf116	MNS1	ENSLSDP00000003971	ENSLSDP00000021433	UPF0691 protein C9orf116.	Meiosis-specific nuclear structural protein 1.	0.688
CUNH9orf116	PACRG	ENSLSDP00000003971	ENSLSDP00000005986	UPF0691 protein C9orf116.	Parkin coregulated gene protein.	0.696
CUNH9orf116	TEKT1	ENSLSDP00000003971	ENSLSDP00000019527	UPF0691 protein C9orf116.	Tektin-1.	0.853
CUNH9orf116	TEKT2	ENSLSDP00000003971	ENSLSDP00000020959	UPF0691 protein C9orf116.	Tektin-2.	0.703
CUNH9orf116	WDR90	ENSLSDP00000003971	ENSLSDP00000002817	UPF0691 protein C9orf116.	WD repeat-containing protein 90.	0.623
EFHC1	CFAP20	ENSLSDP00000015161	ENSLSDP00000022523	EF-hand domain-containing protein 1.	Cilia-and flagella-associated protein 20.	0.627
EFHC1	CUNH9orf116	ENSLSDP00000015161	ENSLSDP00000003971	EF-hand domain-containing protein 1.	UPF0691 protein C9orf116.	0.582
EFHC1	EFHC2	ENSLSDP00000015161	ENSLSDP00000009032	EF-hand domain-containing protein 1.	EF-hand domain-containing family member C2.	0.620