STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDFPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (283 aa)    
Predicted Functional Partners:
MRPL21
39S ribosomal protein L21, mitochondrial.
  
 
 0.916
MRPL20
39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.898
MRPS16
28S ribosomal protein S16, mitochondrial.
  
   0.894
MRPL27
39S ribosomal protein L27, mitochondrial.
  
   0.891
MRPL9
39S ribosomal protein L9, mitochondrial.
  
   0.890
MRPS9
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
   0.890
RPS18
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
   0.887
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 
 0.887
RPL23A
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.886
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.885
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.