Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS4AVacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family. (437 aa)    
Predicted Functional Partners:
VTA1
Vacuolar protein sorting-associated protein VTA1.
   
 0.995
CHMP6
Charged multivesicular body protein 6.
    
 0.992
CHMP5
Charged multivesicular body protein 5.
   
 0.992
CHMP2B
Charged multivesicular body protein 2b.
   
 0.991
CHMP4C
Charged multivesicular body protein 4c.
   
 0.985
CHMP4B
Charged multivesicular body protein 4b.
   
 0.985
CHMP7
Charged multivesicular body protein 7.
   
 0.979
CHMP1A
Charged multivesicular body protein 1a.
   
 0.978
CHMP1B
Charged multivesicular body protein 1b.
   
 0.978
IST1
IST1.
   
 0.948
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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