Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARHGAP40Rho GTPase-activating protein 40. (573 aa)    
Predicted Functional Partners:
RLOC_00013563
Uncharacterized protein KIAA1755.
      
 0.564
RHOBTB3
Rho-related BTB domain-containing protein 3.
   
 0.483
RHOC
Rho-related GTP-binding protein RhoC.
   
 0.441
RHOA
Transforming protein RhoA.
   
 0.441
RHOB
Rho-related GTP-binding protein RhoB.
   
 0.441
VSTM2L
V-set and transmembrane domain-containing protein 2-like protein.
      
 0.438
XPO1
Exportin-1.
      
 0.422
VGLL1
Transcription cofactor vestigial-like protein 1.
      
 0.408
CDC42
Cell division control protein 42.
   
 0.408
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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