Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3B2Splicing factor 3B subunit 2. (654 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1.
   
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
SF3B4
Splicing factor 3B subunit 4.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
   
 0.999
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.997
SF3B6
Splicing factor 3B subunit 6.
    
 0.997
DDX42
ATP-dependent RNA helicase DDX42.
   
 0.996
SF3A1
Splicing factor 3A subunit 1.
   
 0.995
SF3A3
Splicing factor 3A subunit 3.
   
 0.987
SF3A2
Splicing factor 3A subunit 2.
   
 0.985
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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