SF3B2 protein (Lonchura striata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

SF3B2

Splicing factor 3B subunit 2. (654 aa)

Predicted Functional Partners:

SF3B1

0.998

SF3B4

0.998

SF3B3

0.998

SF3B5

0.996

SF3A3

0.996

PHF5A

0.995

SF3A2

0.995

SNRPA1

0.994

SF3B6

0.993

SNRPD1

0.991

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHF5A	SF3A2	ENSLSDP00000003194	ENSLSDP00000006460	PHD finger-like domain-containing protein 5A.	Splicing factor 3A subunit 2.	0.993
PHF5A	SF3A3	ENSLSDP00000003194	ENSLSDP00000020764	PHD finger-like domain-containing protein 5A.	Splicing factor 3A subunit 3.	0.988
PHF5A	SF3B1	ENSLSDP00000003194	ENSLSDP00000001073	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 1.	0.999
PHF5A	SF3B2	ENSLSDP00000003194	ENSLSDP00000006080	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 2.	0.995
PHF5A	SF3B3	ENSLSDP00000003194	ENSLSDP00000022008	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 3.	0.999
PHF5A	SF3B4	ENSLSDP00000003194	ENSLSDP00000016777	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 4.	0.995
PHF5A	SF3B5	ENSLSDP00000003194	ENSLSDP00000003577	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
PHF5A	SF3B6	ENSLSDP00000003194	ENSLSDP00000003227	PHD finger-like domain-containing protein 5A.	Splicing factor 3B subunit 6.	0.999
PHF5A	SNRPA1	ENSLSDP00000003194	ENSLSDP00000015722	PHD finger-like domain-containing protein 5A.	U2 small nuclear ribonucleoprotein A.	0.994
PHF5A	SNRPD1	ENSLSDP00000003194	ENSLSDP00000003938	PHD finger-like domain-containing protein 5A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.980
SF3A2	PHF5A	ENSLSDP00000006460	ENSLSDP00000003194	Splicing factor 3A subunit 2.	PHD finger-like domain-containing protein 5A.	0.993
SF3A2	SF3A3	ENSLSDP00000006460	ENSLSDP00000020764	Splicing factor 3A subunit 2.	Splicing factor 3A subunit 3.	0.996
SF3A2	SF3B1	ENSLSDP00000006460	ENSLSDP00000001073	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 1.	0.994
SF3A2	SF3B2	ENSLSDP00000006460	ENSLSDP00000006080	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 2.	0.995
SF3A2	SF3B3	ENSLSDP00000006460	ENSLSDP00000022008	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 3.	0.994
SF3A2	SF3B4	ENSLSDP00000006460	ENSLSDP00000016777	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 4.	0.996
SF3A2	SF3B5	ENSLSDP00000006460	ENSLSDP00000003577	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.994
SF3A2	SF3B6	ENSLSDP00000006460	ENSLSDP00000003227	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 6.	0.988
SF3A2	SNRPA1	ENSLSDP00000006460	ENSLSDP00000015722	Splicing factor 3A subunit 2.	U2 small nuclear ribonucleoprotein A.	0.993
SF3A2	SNRPD1	ENSLSDP00000006460	ENSLSDP00000003938	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.971