Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SART1U4/U6.U5 tri-snRNP-associated protein 1. (542 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
   
 0.994
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.990
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.988
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.986
DDX23
Putative ATP-dependent RNA helicase DDX23.
   
 0.977
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.972
ZMAT2
Zinc finger matrin-type protein 2.
    
 0.966
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.954
LSM6
U6 snRNA-associated Sm-like protein LSm6.
   
 0.949
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.948
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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