Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBBP4Histone-binding protein RBBP4. (425 aa)    
Predicted Functional Partners:
LIN54
Protein lin-54.
   
 0.995
LIN9
Protein lin-9.
    
 0.995
LIN52
Protein lin-52.
   
 0.992
MYBL2
Myb-related protein B.
   
 0.983
HAT1
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
   
 0.968
EED
Polycomb protein EED.
   
 0.962
SUZ12
Polycomb protein SUZ12.
   
 0.955
AEBP2
Zinc finger protein AEBP2.
    
 0.941
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
    
 0.929
FOXM1
Forkhead box M1.
   
 0.925
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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