STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD2Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (493 aa)    
Predicted Functional Partners:
PUS7
Pseudouridylate synthase 7.
    
 
 0.828
PUS7L
Pseudouridylate synthase 7-like protein.
    
 
 0.823
GTPBP3
tRNA modification GTPase GTPBP3, mitochondrial.
  
 
 0.756
MALSU1
Mitochondrial assembly of ribosomal large subunit protein 1.
  
 
 0.749
MRM3
rRNA methyltransferase 3, mitochondrial.
  
 
 0.718
GTPBP8
GTP-binding protein 8.
   
 
 0.678
MRPL21
39S ribosomal protein L21, mitochondrial.
  
   0.669
MRPL17
39S ribosomal protein L17, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.668
RPL23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.657
PUS1
tRNA pseudouridine synthase A, mitochondrial.
  
  
 0.649
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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