Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MINDY3Protein FAM188A. (445 aa)    
Predicted Functional Partners:
RAD23B
UV excision repair protein RAD23 B.
    
   0.671
RWDD1
RWD domain-containing protein 1.
      
 0.584
UBL7
Ubiquitin-like protein 7.
    
 
 0.565
GHITM
Growth hormone-inducible transmembrane protein; Belongs to the BI1 family.
      
 0.564
TMEM45A
Transmembrane protein 45B.
      
 0.562
ZUP1
Zinc finger with UFM1-specific peptidase domain protein.
      
 0.559
CHAC2
Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
      
 0.537
PAMR1
Inactive serine protease PAMR1; Belongs to the peptidase S1 family.
      
 0.505
COPS7A
COP9 signalosome complex subunit 7a.
      
 0.481
CLUAP1
Clusterin-associated protein 1.
      
 0.468
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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