Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCKTyrosine-protein kinase. (508 aa)    
Predicted Functional Partners:
CD4
T-cell surface glycoprotein CD4.
   
 0.951
CD247
CD247 molecule.
   
 0.932
ZAP70
Tyrosine-protein kinase.
   
 0.923
LYN
Tyrosine-protein kinase.
   
 0.907
SYK
Tyrosine-protein kinase.
   
 0.884
PTPRC
Receptor-type tyrosine-protein phosphatase C.
   
 0.872
ENSLSDP00000005184
annotation not available
   
 0.844
PTPN6
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
   
 0.830
ENSLSDP00000002266
annotation not available
   
 
 0.811
LCP2
Lymphocyte cytosolic protein 2.
   
 0.807
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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