Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MARCKSL1Uncharacterized protein. (230 aa)    
Predicted Functional Partners:
RMI1
RecQ-mediated genome instability protein 1.
    
   0.855
MARCKS
Myristoylated alanine-rich C-kinase substrate.
   
  
 0.595
MAPT
Microtubule associated protein tau.
    
 
 0.587
PTMA
Prothymosin alpha.
   
 
 0.583
PIMREG
Protein PIMREG.
      
 0.563
TDRD3
Tudor domain-containing protein 3.
    
   0.506
BPIFB2
BPI fold containing family B member 2.
  
   
 0.497
SET
Protein SET; Belongs to the nucleosome assembly protein (NAP) family.
   
   0.461
MYO1H
Unconventional myosin-Ih; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.408
WASF2
Wiskott-Aldrich syndrome protein family member 2.
      
 0.408
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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