STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP25U11/U12 small nuclear ribonucleoprotein. (150 aa)    
Predicted Functional Partners:
SNRNP48
U11/U12 small nuclear ribonucleoprotein.
     
 0.883
SNRNP35
U11/U12 small nuclear ribonucleoprotein.
    
 0.882
PDCD7
Programmed cell death protein 7.
     
 0.813
SNRNP70
U1 small nuclear ribonucleoprotein.
    
 0.772
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
     
 0.767
ZCRB1
Zinc finger CCHC-type and RNA-binding motif-containing protein 1.
     
 0.715
SRRM3
Serine/arginine repetitive matrix protein 3.
     
 0.685
SNRPF
Small nuclear ribonucleoprotein F.
   
 0.676
ZMAT5
Zinc finger matrin-type protein 5.
   
  
 0.659
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.639
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.