Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110471034Hemoglobin subunit alpha-A; Belongs to the globin family. (142 aa)    
Predicted Functional Partners:
LOC110474951
Hemoglobin subunit beta.
   
 
 0.796
LOC110474953
Hemoglobin subunit epsilon.
   
 
 0.796
LOC110471035
Hemoglobin subunit alpha-D; Belongs to the globin family.
  
 
 
0.566
NAPRT
Nicotinate phosphoribosyltransferase.
      
 0.560
ENSLSDP00000014768
annotation not available
    
 0.508
SSC4D-2
Scavenger receptor cysteine-rich domain-containing group B protein.
    
 0.508
SSC4D
Scavenger receptor cysteine-rich domain-containing group B protein.
    
 0.508
CD163
Scavenger receptor cysteine-rich type 1 protein M130.
    
 0.508
NGB
Neuroglobin; Belongs to the globin family.
      
 0.477
ENSLSDP00000014779
annotation not available
    
 0.475
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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