Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTIFCBP80/20-dependent translation initiation factor. (610 aa)    
Predicted Functional Partners:
LOC110472250
ATP-dependent RNA helicase DDX19A.
    
   0.843
NCBP1
Nuclear cap-binding protein subunit 1.
      
 0.796
SLBP
Histone RNA hairpin-binding protein.
    
 
 0.740
TSPAN4
Tetraspanin.
      
 0.683
LIPG
Endothelial lipase.
      
 0.682
ACAA2
3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.675
SKA1
Spindle and kinetochore-associated protein 1.
      
 0.666
DDX25
ATP-dependent RNA helicase DDX25.
    
   0.639
HOOK3
Protein Hook 3.
    
   0.621
DYM
Dymeclin.
      
 0.602
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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