STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHTF8Chromosome transmission fidelity protein 8. (230 aa)    
Predicted Functional Partners:
DSCC1
Sister chromatid cohesion protein DCC1.
   
 0.998
CHTF18
Chromosome transmission fidelity protein 18.
   
 0.996
RFC5
Replication factor C subunit 5.
   
 0.946
RFC4
Replication factor C subunit 4.
   
 0.946
RFC3
Replication factor C subunit 3.
   
 0.938
RFC2
Replication factor C subunit 2.
   
 0.904
POLE
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.875
RAD17
Cell cycle checkpoint protein RAD17.
   
 0.788
DDX11
Putative ATP-dependent RNA helicase DDX11-like protein 8.
   
 
 0.782
WDHD1
WD repeat and HMG-box DNA-binding protein 1.
   
 
 0.761
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.