STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPTC7Protein phosphatase; Belongs to the PP2C family. (297 aa)    
Predicted Functional Partners:
STK16
Serine/threonine-protein kinase 16.
   
  
 0.563
PDP1
[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial.
    
 
 0.549
PDP2
[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial.
    
 
 0.549
ZER1
Protein zer-1.
      
 0.540
CDA
Cytidine deaminase isoform X1.
   
 
 0.535
TNKS1BP1
Tankyrase-1-binding protein.
   
 
 0.526
MTFMT
Methionyl-tRNA formyltransferase, mitochondrial.
  
   0.437
PPM1K
Protein phosphatase 1K, mitochondrial.
    
 
 0.435
PPM1L
Protein phosphatase 1L.
    
 
 0.435
POLR2A
DNA-directed RNA polymerase II subunit RPB1.
    
 
 0.405
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.