Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110483603Serine/threonine-protein phosphatase 4 regulatory subunit 1. (956 aa)    
Predicted Functional Partners:
LOC110482800
Serine/threonine-protein phosphatase.
    
 0.936
CCDC6
Coiled-coil domain-containing protein 6.
    
 
 0.880
PPP4C
Serine/threonine-protein phosphatase.
    
 0.840
C1S
Complement C1s subcomponent; Belongs to the peptidase S1 family.
    
   0.839
PPP2CA
Serine/threonine-protein phosphatase.
   
 0.691
PPP2CB
Serine/threonine-protein phosphatase.
   
 0.691
NDEL1
Nuclear distribution protein nudE-like 1.
   
 
 0.679
PPP2R2A
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.569
PPP2R2B
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1.
    
 0.569
SMARCE1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
   
  
 0.568
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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