Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBM38RNA-binding protein 38. (215 aa)    
Predicted Functional Partners:
RBFOX2
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
 0.734
RBFOX1
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
 0.720
ENSLSDP00000003426
ELAV like protein 2/3/4.
  
   
 0.609
RAE1
mRNA export factor.
      
 0.589
PCK1
Phosphoenolpyruvate carboxykinase, cytosolic [GTP].
      
 0.588
ELAVL2
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.577
ELAVL1
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.570
PMEPA1
Protein TMEPAI.
      
 0.568
SPO11
Meiotic recombination protein SPO11.
      
 0.568
ELAVL4
ELAV-like protein; Belongs to the RRM elav family.
  
   
 0.565
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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