STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAE1mRNA export factor. (368 aa)    
Predicted Functional Partners:
NUP98
Nuclear pore complex protein Nup98-Nup96.
   
 0.999
NXF1
Nuclear RNA export factor 1.
    
 0.997
NUP214
Nuclear pore complex protein Nup214.
    
 0.991
LOC110478774
E3 SUMO-protein ligase RanBP2.
   
 0.979
GLE1
Nucleoporin GLE1.
   
 0.976
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.967
SEH1L
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
   
 0.954
NUP155
Nuclear pore complex protein Nup155.
    
 0.952
NUP35
Nucleoporin NUP53.
   
 
 0.945
NUP93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.942
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.