Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (360 aa)    
Predicted Functional Partners:
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.776
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.773
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.769
LEO1
RNA polymerase-associated protein LEO1.
    
 0.765
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.759
POLR2H
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.759
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
   
 0.754
ENSLSDP00000015676
annotation not available
   
 0.753
POLR2J
DNA-directed RNA polymerase II subunit RPB11-a.
   
 0.751
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.750
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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