RPP38 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPP38

Ribonuclease P protein subunit p38. (144 aa)

Predicted Functional Partners:

ENSLSDP00000008068

0.997

RPP25

0.997

POP4

0.997

POP5

0.996

NOP56

0.995

NOP58

0.992

UTP15

0.991

RPS6

0.980

RRP9

0.973

RPP30

0.973

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLSDP00000008068	NOP56	ENSLSDP00000008068	ENSLSDP00000018344	annotation not available	Nucleolar protein 56.	0.986
ENSLSDP00000008068	NOP58	ENSLSDP00000008068	ENSLSDP00000022710	annotation not available	Nucleolar protein 58.	0.984
ENSLSDP00000008068	RPP38	ENSLSDP00000008068	ENSLSDP00000006487	annotation not available	Ribonuclease P protein subunit p38.	0.997
ENSLSDP00000008068	RPS6	ENSLSDP00000008068	ENSLSDP00000005950	annotation not available	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
ENSLSDP00000008068	RRP9	ENSLSDP00000008068	ENSLSDP00000017237	annotation not available	U3 small nucleolar RNA-interacting protein 2.	0.984
NOP56	ENSLSDP00000008068	ENSLSDP00000018344	ENSLSDP00000008068	Nucleolar protein 56.	annotation not available	0.986
NOP56	NOP58	ENSLSDP00000018344	ENSLSDP00000022710	Nucleolar protein 56.	Nucleolar protein 58.	0.999
NOP56	RPP38	ENSLSDP00000018344	ENSLSDP00000006487	Nucleolar protein 56.	Ribonuclease P protein subunit p38.	0.995
NOP56	RPS6	ENSLSDP00000018344	ENSLSDP00000005950	Nucleolar protein 56.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.975
NOP56	RRP9	ENSLSDP00000018344	ENSLSDP00000017237	Nucleolar protein 56.	U3 small nucleolar RNA-interacting protein 2.	0.998
NOP56	UTP15	ENSLSDP00000018344	ENSLSDP00000020058	Nucleolar protein 56.	U3 small nucleolar RNA-associated protein 15.	0.998
NOP58	ENSLSDP00000008068	ENSLSDP00000022710	ENSLSDP00000008068	Nucleolar protein 58.	annotation not available	0.984
NOP58	NOP56	ENSLSDP00000022710	ENSLSDP00000018344	Nucleolar protein 58.	Nucleolar protein 56.	0.999
NOP58	RPP30	ENSLSDP00000022710	ENSLSDP00000023876	Nucleolar protein 58.	Ribonuclease P protein subunit p30.	0.451
NOP58	RPP38	ENSLSDP00000022710	ENSLSDP00000006487	Nucleolar protein 58.	Ribonuclease P protein subunit p38.	0.992
NOP58	RPS6	ENSLSDP00000022710	ENSLSDP00000005950	Nucleolar protein 58.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.968
NOP58	RRP9	ENSLSDP00000022710	ENSLSDP00000017237	Nucleolar protein 58.	U3 small nucleolar RNA-interacting protein 2.	0.999
NOP58	UTP15	ENSLSDP00000022710	ENSLSDP00000020058	Nucleolar protein 58.	U3 small nucleolar RNA-associated protein 15.	0.997
POP4	POP5	ENSLSDP00000025338	ENSLSDP00000001184	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999
POP4	RPP25	ENSLSDP00000025338	ENSLSDP00000012440	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Cytochrome c oxidase subunit 5A, mitochondrial.	0.997