Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LINGO3Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3. (604 aa)    
Predicted Functional Partners:
FAM151B
Protein FAM151B.
    
 
 0.792
CWC25
Pre-mRNA-splicing factor CWC25.
   
 
 0.554
C1orf109
Uncharacterized protein C1orf109.
   
    0.532
CALHM4
Protein FAM26D.
   
    0.508
CALHM2
Calcium homeostasis modulator protein 2.
   
    0.508
LOC110467862
LIX1-like protein.
   
    0.504
LOC110467864
LIX1-like protein.
   
    0.504
TIAM1
T-lymphoma invasion and metastasis-inducing protein 1.
    
 
 0.471
TIAM2
T-lymphoma invasion and metastasis-inducing protein 2.
    
 
 0.471
DDX59
Putative ATP-dependent RNA helicase DDX59.
    
 0.444
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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