STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (422 aa)    
Predicted Functional Partners:
PTN
Pleiotrophin.
    
 
 0.678
DCN
Decorin; May affect the rate of fibrils formation.
     
 0.650
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.620
BCAN
Brevican core protein.
     
 0.619
EGFLAM
Pikachurin.
     
 0.612
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
0.582
SDC2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.581
CSPG5
Chondroitin sulfate proteoglycan 5.
     
 0.552
GDNF
Glial cell line-derived neurotrophic factor.
      
 0.548
ARTN
Artemin.
      
 0.522
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.