YTHDC1 protein (Lonchura striata) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

YTHDC1

YTH domain-containing protein 1. (715 aa)

Predicted Functional Partners:

NUDT21

0.815

CPSF2

0.793

CSTF3

0.779

ZC3H13

0.679

WTAP

0.676

SRSF10

0.674

SRSF3

0.672

CPSF6

0.670

METTL14

0.669

METTL3

0.664

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSF2	CPSF6	ENSLSDP00000021537	ENSLSDP00000004524	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 6.	0.885
CPSF2	CSTF3	ENSLSDP00000021537	ENSLSDP00000012150	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage stimulation factor subunit 3.	0.943
CPSF2	NUDT21	ENSLSDP00000021537	ENSLSDP00000001187	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.915
CPSF2	YTHDC1	ENSLSDP00000021537	ENSLSDP00000006684	Cleavage and polyadenylation specificity factor subunit 2.	YTH domain-containing protein 1.	0.793
CPSF6	CPSF2	ENSLSDP00000004524	ENSLSDP00000021537	Cleavage and polyadenylation specificity factor subunit 6.	Cleavage and polyadenylation specificity factor subunit 2.	0.885
CPSF6	CSTF3	ENSLSDP00000004524	ENSLSDP00000012150	Cleavage and polyadenylation specificity factor subunit 6.	Cleavage stimulation factor subunit 3.	0.782
CPSF6	METTL14	ENSLSDP00000004524	ENSLSDP00000021391	Cleavage and polyadenylation specificity factor subunit 6.	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	0.402
CPSF6	NUDT21	ENSLSDP00000004524	ENSLSDP00000001187	Cleavage and polyadenylation specificity factor subunit 6.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.996
CPSF6	SRSF10	ENSLSDP00000004524	ENSLSDP00000004162	Cleavage and polyadenylation specificity factor subunit 6.	Serine/arginine-rich splicing factor 10.	0.471
CPSF6	SRSF3	ENSLSDP00000004524	ENSLSDP00000001689	Cleavage and polyadenylation specificity factor subunit 6.	Serine/arginine-rich splicing factor 3.	0.837
CPSF6	YTHDC1	ENSLSDP00000004524	ENSLSDP00000006684	Cleavage and polyadenylation specificity factor subunit 6.	YTH domain-containing protein 1.	0.670
CPSF6	ZC3H13	ENSLSDP00000004524	ENSLSDP00000010416	Cleavage and polyadenylation specificity factor subunit 6.	Zinc finger CCCH domain-containing protein 13.	0.685
CSTF3	CPSF2	ENSLSDP00000012150	ENSLSDP00000021537	Cleavage stimulation factor subunit 3.	Cleavage and polyadenylation specificity factor subunit 2.	0.943
CSTF3	CPSF6	ENSLSDP00000012150	ENSLSDP00000004524	Cleavage stimulation factor subunit 3.	Cleavage and polyadenylation specificity factor subunit 6.	0.782
CSTF3	NUDT21	ENSLSDP00000012150	ENSLSDP00000001187	Cleavage stimulation factor subunit 3.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.862
CSTF3	YTHDC1	ENSLSDP00000012150	ENSLSDP00000006684	Cleavage stimulation factor subunit 3.	YTH domain-containing protein 1.	0.779
METTL14	CPSF6	ENSLSDP00000021391	ENSLSDP00000004524	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	Cleavage and polyadenylation specificity factor subunit 6.	0.402
METTL14	METTL3	ENSLSDP00000021391	ENSLSDP00000001690	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	N6-adenosine-methyltransferase subunit; Belongs to the MT-A70-like family.	0.997
METTL14	WTAP	ENSLSDP00000021391	ENSLSDP00000021474	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	Pre-mRNA-splicing regulator WTAP.	0.977
METTL14	YTHDC1	ENSLSDP00000021391	ENSLSDP00000006684	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	YTH domain-containing protein 1.	0.669