Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL17A1Collagen type XVII alpha 1 chain. (1292 aa)    
Predicted Functional Partners:
ITGB4
Integrin beta.
   
 0.928
LAMB3
Laminin subunit beta 3.
   
 0.768
LAMC2
Laminin subunit gamma-2.
   
 0.745
LYVE1
Lymphatic vessel endothelial hyaluronic acid receptor 1.
    
 0.737
XPR1
Xenotropic and polytropic retrovirus receptor 1.
      
 0.726
FAM83H
Protein FAM83H.
      
 0.703
LAMA4
Laminin subunit alpha-4.
   
 0.681
ITGB6
Integrin subunit beta 6.
    
 0.613
AHSG
Alpha-2-HS-glycoprotein.
    
 0.600
LAMA3
Laminin subunit alpha 3.
   
 0.584
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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