Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LONRF3LON peptidase N-terminal domain and RING finger protein 3. (740 aa)    
Predicted Functional Partners:
TBC1D8
TBC1 domain family member 8.
      
 0.542
UBE2N
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.518
C16orf72
UPF0472 protein C16orf72.
      
 0.500
TP53BP1
Tumor suppressor p53-binding protein 1.
    
 0.500
PAXIP1
PAX-interacting protein 1.
   
 0.434
LEAP2
Liver-expressed antimicrobial peptide 2.
      
 0.408
CSTF3
Cleavage stimulation factor subunit 3.
      
 0.408
RNF149
E3 ubiquitin-protein ligase RNF149.
      
 0.408
RAD50
DNA repair protein RAD50.
   
 0.400
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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