STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUL3Cullin-3; Belongs to the cullin family. (768 aa)    
Predicted Functional Partners:
SPOP
Speckle-type POZ protein.
   
 0.996
SPOPL
Speckle-type POZ protein-like.
   
 0.996
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.993
UBXN7
UBX domain-containing protein 7.
   
 0.983
KLHL17
Kelch-like protein 17.
    
 0.981
NEDD8
Ubiquitin-like protein Nedd8.
    
 0.978
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.974
KLHL12
Kelch-like protein 12.
    
 0.966
SUFU
Suppressor of fused.
     
 0.965
GLI2
Zinc finger protein GLI2.
    
 0.963
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.