TFG protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TFG

Protein TFG. (148 aa)

Predicted Functional Partners:

SEC16A

0.772

SEC16B

0.772

SEC31B

0.766

SEC31A

0.766

SEC13

0.699

SEC24C

0.686

TSNARE1_0

0.675

SEC24A

0.664

SEC24B

0.659

SEC24D

0.655

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC13	SEC16A	ENSLSDP00000023483	ENSLSDP00000004023	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.939
SEC13	SEC16B	ENSLSDP00000023483	ENSLSDP00000015811	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.939
SEC13	SEC24A	ENSLSDP00000023483	ENSLSDP00000010144	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec24A.	0.998
SEC13	SEC24B	ENSLSDP00000023483	ENSLSDP00000017619	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec24B.	0.998
SEC13	SEC24C	ENSLSDP00000023483	ENSLSDP00000007804	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec24C.	0.998
SEC13	SEC24D	ENSLSDP00000023483	ENSLSDP00000021400	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec24D.	0.998
SEC13	SEC31A	ENSLSDP00000023483	ENSLSDP00000009855	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec31A.	0.996
SEC13	SEC31B	ENSLSDP00000023483	ENSLSDP00000004289	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein Sec31B.	0.996
SEC13	TFG	ENSLSDP00000023483	ENSLSDP00000006791	Protein SEC13; Belongs to the WD repeat SEC13 family.	Protein TFG.	0.699
SEC13	TSNARE1_0	ENSLSDP00000023483	ENSLSDP00000000823	Protein SEC13; Belongs to the WD repeat SEC13 family.	t-SNARE domain-containing protein 1.	0.914
SEC16A	SEC13	ENSLSDP00000004023	ENSLSDP00000023483	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein SEC13; Belongs to the WD repeat SEC13 family.	0.939
SEC16A	SEC24A	ENSLSDP00000004023	ENSLSDP00000010144	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24A.	0.853
SEC16A	SEC24B	ENSLSDP00000004023	ENSLSDP00000017619	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24B.	0.864
SEC16A	SEC24C	ENSLSDP00000004023	ENSLSDP00000007804	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24C.	0.918
SEC16A	SEC24D	ENSLSDP00000004023	ENSLSDP00000021400	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24D.	0.880
SEC16A	SEC31A	ENSLSDP00000004023	ENSLSDP00000009855	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec31A.	0.780
SEC16A	SEC31B	ENSLSDP00000004023	ENSLSDP00000004289	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec31B.	0.780
SEC16A	TFG	ENSLSDP00000004023	ENSLSDP00000006791	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein TFG.	0.772
SEC16B	SEC13	ENSLSDP00000015811	ENSLSDP00000023483	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein SEC13; Belongs to the WD repeat SEC13 family.	0.939
SEC16B	SEC24A	ENSLSDP00000015811	ENSLSDP00000010144	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24A.	0.853