Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDFY1WD repeat and FYVE domain-containing protein 1. (410 aa)    
Predicted Functional Partners:
NUDCD1
NudC domain-containing protein 1.
    
   0.785
TBC1D31
TBC1 domain family member 31.
     
 0.599
HMGB3
High mobility group protein B3.
   
 0.591
RNPC3
RNA-binding protein 40.
      
 0.581
VAMP8
Vesicle-associated membrane protein 8.
    
 0.568
WDFY4
WD repeat-and FYVE domain-containing protein 4.
      
 0.565
TRIO
Triple functional domain protein.
    
 
 0.560
NDUFS5
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5.
      
 0.558
AK9
Adenylate kinase 9.
   
 0.558
TMEM123
Porimin.
   
  0.540
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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