Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CALHM3Calcium homeostasis modulator protein 3. (342 aa)    
Predicted Functional Partners:
CALHM1
Calcium homeostasis modulator protein 1.
     
 0.753
PTPRE
Receptor-type tyrosine-protein phosphatase epsilon.
      
 0.584
HAND2
Heart-and neural crest derivatives-expressed protein 2.
   
  
 0.539
PANX1
Pannexin; Structural component of the gap junctions and the hemichannels.
      
 0.537
KLHL29
Kelch-like protein 29.
      
 0.529
KLHL29-2
Kelch-like protein 29.
      
 0.529
TRPM5
Transient receptor potential cation channel subfamily M member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.526
VCL
Vinculin.
      
 0.523
HAND1
Heart-and neural crest derivatives-expressed protein 1.
   
  
 0.490
PCGF6
Polycomb group RING finger protein 6.
      
 0.453
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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