STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALHM1Calcium homeostasis modulator protein 1. (340 aa)    
Predicted Functional Partners:
CALHM3
Calcium homeostasis modulator protein 3.
  
  
0.649
PDE1A
Phosphodiesterase.
      
 0.607
TRPM5
Transient receptor potential cation channel subfamily M member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.589
PANX1
Pannexin; Structural component of the gap junctions and the hemichannels.
      
 0.578
OTOP1
Otopetrin-1.
   
  
 0.546
PKD2L1
Polycystic kidney disease 2-like 1 protein.
      
 0.533
TRPM2
Transient receptor potential cation channel subfamily M member 2.
      
 0.459
PANX2
Pannexin-2; Belongs to the pannexin family.
      
 0.459
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.