Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CALHM1Calcium homeostasis modulator protein 1. (340 aa)    
Predicted Functional Partners:
CALHM3
Calcium homeostasis modulator protein 3.
     
 0.753
TRPM5
Transient receptor potential cation channel subfamily M member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.710
PANX1
Pannexin; Structural component of the gap junctions and the hemichannels.
      
 0.662
OTOP1
Otopetrin-1.
   
  
 0.599
ANO6
Anoctamin.
      
 0.591
TSPO
Translocator protein.
      
 0.576
PANX2
Pannexin-2; Belongs to the pannexin family.
      
 0.576
TMEM233
Transmembrane protein 233.
      
 0.569
IQCA1
IQ motif containing with AAA domain 1.
      
 0.566
ITGB1BP2
Cysteine and histidine-rich domain-containing protein 1.
      
 0.549
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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