STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain protein 3. (327 aa)    
Predicted Functional Partners:
SH3RF3
SH3 domain-containing RING finger protein 3.
    
 0.596
PTK2
Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.577
PTK2B
Protein-tyrosine kinase 2-beta; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.577
PARVB
Beta-parvin.
   
 0.562
PARVA
Alpha-parvin.
   
 0.562
VCL
Vinculin.
   
 0.529
SORBS1
Sorbin and SH3 domain-containing protein 1.
 
  
 0.521
CRKL
Crk-like protein.
    
 0.484
CRK
Adapter molecule crk.
    
 0.484
ACTN2
Alpha-actinin-2.
   
 
 0.482
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.