STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD11Protein RRP5. (1834 aa)    
Predicted Functional Partners:
UTP20
Small subunit processome component 20.
   
 0.999
UTP4
Cirhin.
   
 0.999
PWP2
Periodic tryptophan protein 2.
   
 
 0.999
NOP14
Nucleolar protein 14.
   
 0.999
BMS1
Ribosome biogenesis protein BMS1.
   
 
 0.999
NOC4L
Nucleolar complex protein 4.
   
 0.999
HEATR1
HEAT repeat-containing protein 1.
   
 0.999
NOL6
Nucleolar protein 6.
   
 0.999
RPL11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.998
WDR75
WD repeat-containing protein 75.
   
 0.998
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.