STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG1Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (3661 aa)    
Predicted Functional Partners:
UPF1
Regulator of nonsense transcripts 1.
    
 0.997
SMG8
Protein SMG8.
   
 0.981
SMG7
Protein SMG7.
   
 0.980
ETF1
Eukaryotic peptide chain release factor subunit 1.
    
 
 0.971
UPF2
Regulator of nonsense transcripts 2.
   
 
 0.968
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.957
RPTOR
Regulatory-associated protein of mTOR.
   
 0.929
RICTOR
Rapamycin-insensitive companion of mTOR.
   
 0.928
MLST8
Target of rapamycin complex subunit lst8.
    
 0.924
MAPKAP1
Target of rapamycin complex 2 subunit MAPKAP1.
    
 0.924
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.