Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAF5Transcription initiation factor TFIID subunit 5. (783 aa)    
Predicted Functional Partners:
TAF12
Transcription initiation factor TFIID subunit 12.
   
 0.984
TAF2
Transcription initiation factor TFIID subunit 2.
    
 0.981
TAF11
Transcription initiation factor TFIID subunit 11.
    
 0.981
TAF7
Transcription initiation factor TFIID subunit 7.
    
 0.980
TAF1
Transcription initiation factor TFIID subunit.
   
 0.980
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.980
TAF8
Transcription initiation factor TFIID subunit 8.
    
 0.980
TAF3
Transcription initiation factor TFIID subunit 3.
    
 0.976
TAF13
Transcription initiation factor TFIID subunit 13.
    
 0.975
LOC110474354
Transcription initiation factor TFIID subunit 9.
    
 0.972
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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