STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETD4SET domain-containing protein 4. (406 aa)    
Predicted Functional Partners:
ENSLSDP00000013904
T-cell immunoglobulin and mucin domain-containing protein 4.
      
 0.615
KIAA1958
Uncharacterized protein KIAA1958.
      
 0.605
SETD6
N-lysine methyltransferase SETD6.
    
 
 0.600
YARS1
Tyrosine--tRNA ligase.
    
 
 0.585
PRDM15
PR domain zinc finger protein 15.
    
 0.559
GAMT
Guanidinoacetate N-methyltransferase.
   
  
 0.556
SETD3
Protein-histidine N-methyltransferase.
      
0.550
RRNAD1
Protein RRNAD1.
   
  
 0.548
METTL18
Histidine protein methyltransferase 1.
   
  
 0.544
MMAA
Methylmalonic aciduria type A protein, mitochondrial.
    
 0.535
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.