Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RUNX1Runt-related transcription factor 1. (372 aa)    
Predicted Functional Partners:
CBFB
Core-binding factor subunit beta.
    
 0.907
EP300
Histone acetyltransferase p300.
    
 0.793
TAL1
T-cell acute lymphocytic leukemia protein 1.
    
 0.765
SOX9
Transcription factor SOX-9.
   
 0.741
CREBBP
CREB-binding protein.
    
 0.728
CDK6
Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.
    
 0.716
GATA2
GATA-binding factor 2.
    
 0.716
STUB1
STIP1 y and U box-containing protein 1.
    
 0.713
PML
Protein PML.
    
 0.686
GATA1
Erythroid transcription factor-like.
    
 0.677
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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