STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLIC6Chloride intracellular channel protein 6. (251 aa)    
Predicted Functional Partners:
EZR
Ezrin.
   
 0.609
RDX
Radixin.
   
 0.563
USH2A
Usherin.
      
 0.522
WFS1
Wolframin.
      
 0.522
CDH23
Cadherin-23.
      
 0.521
SRRM4
Serine/arginine repetitive matrix protein 4.
      
 0.518
SLC17A8
Vesicular glutamate transporter 3.
      
 0.515
SLC52A3
Solute carrier family 52, riboflavin transporter, member 3.
      
 0.515
GRXCR2
Glutaredoxin domain-containing cysteine-rich protein 2.
     
 0.510
SLC26A5
Prestin.
      
 0.478
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.