Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZBTB11Zinc finger and BTB domain-containing protein 11. (1039 aa)    
Predicted Functional Partners:
RPF1
Ribosome production factor 1.
    
   0.851
ZCRB1
Zinc finger CCHC-type and RNA-binding motif-containing protein 1.
    
   0.666
SNAPC1
snRNA-activating protein complex subunit 1.
     
 0.608
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
   0.607
ANKRD27
Ankyrin repeat domain-containing protein 27.
    
 0.562
DENR
Density-regulated protein.
      
 0.543
LOC110480062
Neurotrypsin; Belongs to the peptidase S1 family.
    
 
 0.527
RPL31
60S ribosomal protein L31.
    
   0.518
PRSS12
Neurotrypsin; Belongs to the peptidase S1 family.
    
 
 0.504
RPL10L
60S ribosomal protein L10.
    
   0.500
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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