STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN28BProtein lin-28 B. (249 aa)    
Predicted Functional Partners:
DROSHA
Ribonuclease 3.
   
 
 0.633
TUT4
Terminal uridylyltransferase 4.
   
 0.609
DGCR8
Microprocessor complex subunit DGCR8.
      
 0.562
DICER1
Endoribonuclease Dicer; Belongs to the helicase family. Dicer subfamily.
   
 
 0.556
BEND2
BEN domain-containing protein 2.
      
 0.526
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 
 0.524
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
    
 0.524
HMGA2
High mobility group protein HMGI-C.
      
 0.521
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.498
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.487
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.