STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD7PDZ domain containing 7. (1004 aa)    
Predicted Functional Partners:
FCHSD2
F-BAR and double SH3 domains protein 2.
    
   0.757
ADGRV1
G-protein coupled receptor 98.
    
 
 0.678
USH2A
Usherin.
    
 
 0.677
USH1G
Usher syndrome type-1G.
    
 0.665
CLRN1
Clarin-1 isoform X1.
      
 0.573
SLC26A4
Pendrin; Sodium-independent transporter of chloride and iodide. Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
      
 0.539
CIB2
Calcium and integrin-binding family member 2.
    
 
 0.536
IFT57
Intraflagellar transport protein 57.
    
 0.526
FCHSD1
FCH and double SH3 domains 1.
    
   0.519
USH1C
Harmonin.
      
0.515
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.