STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GIN1_1Gypsy retrotransposon integrase-like protein 1. (422 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.773
LOC110477051
Fanconi anemia group M protein.
    
 0.773
EFCAB2
EF-hand calcium-binding domain-containing protein 2.
   
 
 0.527
LIN52
Protein lin-52.
    
 0.526
LIN54
Protein lin-54.
    
 0.512
PGBD5
PiggyBac transposable element-derived protein 5.
  
 
 0.505
LIN9
Protein lin-9.
    
 0.488
RPA1
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 0.467
RBBP7
Histone-binding protein RBBP7.
    
 0.426
RBBP4
Histone-binding protein RBBP4.
    
 0.426
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.