OGFOD2 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OGFOD2

2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2. (349 aa)

Predicted Functional Partners:

TMEM168

0.696

SMDT1

0.577

GLT8D1

0.571

FAM13A

0.569

ASPHD2

0.569

WBP1

0.568

OGFOD1

0.567

ENSLSDP00000011127

0.567

ABCB9

0.566

LOC110481231

0.566

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB9	OGFOD2	ENSLSDP00000007050	ENSLSDP00000007055	ATP-binding cassette sub-family B member 9.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.566
ASPHD2	GLT8D1	ENSLSDP00000017421	ENSLSDP00000018197	Aspartate beta-hydroxylase domain-containing protein 2.	Glycosyltransferase 8 domain-containing protein 1.	0.569
ASPHD2	OGFOD2	ENSLSDP00000017421	ENSLSDP00000007055	Aspartate beta-hydroxylase domain-containing protein 2.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.569
ASPHD2	SMDT1	ENSLSDP00000017421	ENSLSDP00000003094	Aspartate beta-hydroxylase domain-containing protein 2.	Essential MCU regulator, mitochondrial.	0.568
ENSLSDP00000011127	OGFOD2	ENSLSDP00000011127	ENSLSDP00000007055	annotation not available	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.567
ENSLSDP00000011127	WBP1	ENSLSDP00000011127	ENSLSDP00000018537	annotation not available	WW domain binding protein 1.	0.568
FAM13A	OGFOD2	ENSLSDP00000009426	ENSLSDP00000007055	Protein FAM13A.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.569
FAM13A	TMEM168	ENSLSDP00000009426	ENSLSDP00000001610	Protein FAM13A.	Transmembrane protein 168.	0.539
GLT8D1	ASPHD2	ENSLSDP00000018197	ENSLSDP00000017421	Glycosyltransferase 8 domain-containing protein 1.	Aspartate beta-hydroxylase domain-containing protein 2.	0.569
GLT8D1	OGFOD2	ENSLSDP00000018197	ENSLSDP00000007055	Glycosyltransferase 8 domain-containing protein 1.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.571
LOC110481231	OGFOD2	ENSLSDP00000015634	ENSLSDP00000007055	Antigen peptide transporter 1.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.566
OGFOD1	OGFOD2	ENSLSDP00000001173	ENSLSDP00000007055	Prolyl 3-hydroxylase OGFOD1.	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	0.567
OGFOD2	ABCB9	ENSLSDP00000007055	ENSLSDP00000007050	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	ATP-binding cassette sub-family B member 9.	0.566
OGFOD2	ASPHD2	ENSLSDP00000007055	ENSLSDP00000017421	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Aspartate beta-hydroxylase domain-containing protein 2.	0.569
OGFOD2	ENSLSDP00000011127	ENSLSDP00000007055	ENSLSDP00000011127	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	annotation not available	0.567
OGFOD2	FAM13A	ENSLSDP00000007055	ENSLSDP00000009426	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Protein FAM13A.	0.569
OGFOD2	GLT8D1	ENSLSDP00000007055	ENSLSDP00000018197	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Glycosyltransferase 8 domain-containing protein 1.	0.571
OGFOD2	LOC110481231	ENSLSDP00000007055	ENSLSDP00000015634	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Antigen peptide transporter 1.	0.566
OGFOD2	OGFOD1	ENSLSDP00000007055	ENSLSDP00000001173	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Prolyl 3-hydroxylase OGFOD1.	0.567
OGFOD2	SMDT1	ENSLSDP00000007055	ENSLSDP00000003094	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.	Essential MCU regulator, mitochondrial.	0.577