Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFG1LLactation elevated protein 1. (468 aa)    
Predicted Functional Partners:
GUCD1
Protein GUCD1.
      
 0.684
UPB1
Beta-ureidopropionase.
      
 0.682
ZNF280D
Zinc finger protein 280D.
      
 0.579
BCAS3
Breast carcinoma-amplified sequence 3.
      
 0.568
ICE2
Little elongation complex subunit 2.
      
 0.567
SUSD2
Sushi domain-containing protein 2.
      
 0.566
MKLN1
Muskelin.
      
 0.557
LOC110481288
Glutathione S-transferase theta-1; Belongs to the GST superfamily.
      
 0.545
LOC110481290
Glutathione S-transferase theta-1; Belongs to the GST superfamily.
      
 0.545
MIPOL1
Mirror-image polydactyly gene 1.
      
 0.536
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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