STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPM3Nucleophosmin 3. (179 aa)    
Predicted Functional Partners:
NPM1
Nucleophosmin.
   
 
0.654
TMEM167A
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.560
SET
Protein SET; Belongs to the nucleosome assembly protein (NAP) family.
   
  
 0.529
VGLL4
Transcription cofactor vestigial-like protein 4.
      
 0.522
FGF8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
 
  
 
 0.521
OGT
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase subunit.
   
 
 0.506
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.