Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDC40Pre-mRNA-processing factor 17. (581 aa)    
Predicted Functional Partners:
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.998
PRPF18
Pre-mRNA-splicing factor 18.
   
 0.996
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.994
CWC25
Pre-mRNA-splicing factor CWC25.
    
 0.993
CWC22
Pre-mRNA-splicing factor CWC22.
   
 0.992
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.989
CCDC12
Coiled-coil domain-containing protein 12.
    
  0.988
YJU2
Coiled-coil domain-containing protein 94.
   
 0.986
DHX8
ATP-dependent RNA helicase DHX8.
   
 0.985
SDE2
Protein SDE2.
    
 0.983
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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