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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMS19MMS19 nucleotide excision repair. (1028 aa)    
Predicted Functional Partners:
CIAO1
Probable cytosolic iron-sulfur protein assembly protein CIAO1; Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Belongs to the WD repeat CIA1 family.
    
 0.988
CIAO2B
Mitotic spindle-associated MMXD complex subunit MIP18.
    
 0.983
CIAO2A
MIP18 family protein FAM96A.
    
 0.979
LOC110482677
TFIIH basal transcription factor complex helicase XPD subunit.
    
 0.961
BRIP1
Fanconi anemia group J.
    
 0.839
CIAO3
Cytosolic Fe-S cluster assembly factor NARFL; Belongs to the NARF family.
    
 0.792
DNA2
DNA replication ATP-dependent helicase/nuclease DNA2.
    
 0.789
ERCC3
TFIIH basal transcription factor complex helicase XPB subunit.
   
 
 0.788
POLE
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.779
DDX11
Putative ATP-dependent RNA helicase DDX11-like protein 8.
    
 0.775
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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