STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBTFNucleolar transcription factor 1. (780 aa)    
Predicted Functional Partners:
POLR1E
DNA-directed RNA polymerase I subunit RPA49.
    
 0.801
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
    
 0.798
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.744
GTF2H1
General transcription factor IIH subunit 1.
    
 0.721
GTF2H3
General transcription factor IIH subunit 3.
    
 0.719
ERCC3
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.714
LOC110475048
General transcription factor IIH subunit.
    
 0.702
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.701
ENSLSDP00000000469
annotation not available
    
 0.701
CCNH
Cyclin-H; Belongs to the cyclin family.
    
 0.699
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.