Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000007263annotation not available (75 aa)    
Predicted Functional Partners:
LRBA
Lipopolysaccharide-responsive and beige-like anchor protein.
 
      0.631
NOTCH1
Neurogenic locus notch 1.
    
  0.562
IL10RA
Interleukin-10 receptor subunit alpha.
      
 0.490
STOM
Erythrocyte band 7 integral membrane protein.
    
 0.485
GUCY2C
Guanylate cyclase.
      
 0.473
TBC1D31
TBC1 domain family member 31.
      
 0.431
URB1
Nucleolar pre-ribosomal-associated protein 1.
      
 0.421
TMEM51
Transmembrane protein 51.
  
   
 0.419
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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